`biocantor.io.genbank.exc`

Module Contents

exception biocantor.io.genbank.exc.GenBankParserError

Bases: inscripta.biocantor.io.exc.InvalidInputError

Raised when there is an error parsing a genbank file.

exception biocantor.io.genbank.exc.GenBankLocusTagError

Raised when a locus tag error is encountered in a genbank file.

exception biocantor.io.genbank.exc.GenBankMultipleTranscriptFeatureError

Raised when more than one transcript-level feature maps to a gene in a genbank file.

exception biocantor.io.genbank.exc.EmptyGenBankError

Raised when a genbank parsing event returns zero genes and zero features.

exception biocantor.io.genbank.exc.GenBankExportError

Bases: inscripta.biocantor.io.exc.BioCantorIOException

Raised when an error is encountered exporting a genbank file.

exception biocantor.io.genbank.exc.GenBankLocationException

Raised when there is an issue with locations (usually BioPython makes them None)

exception biocantor.io.genbank.exc.GenBankNullStrandException

Raised when BioPython constructs a feature with a null Strand.

exception biocantor.io.genbank.exc.GenBankUnknownFeatureWarning

Base class for warning categories.

exception biocantor.io.genbank.exc.GenBankEmptyGeneWarning

Base class for warning categories.

exception biocantor.io.genbank.exc.GenBankDuplicateLocusTagWarning

Base class for warning categories.

exception biocantor.io.genbank.exc.UnknownGenBankFeatureWarning

Base class for warning categories.