BioCantor

A Python library that integrates flexible feature arithmetic with sequences and arbitrarily nested coordinate systems.

These core data models are then built upon to build in-memory representations of genomic intervals, including genes, transcripts and non-coding features.

These data structures can be parsed from GenBank and GFF3, and exported to GenBank, GFF3 and BED.

BioCantor arithmetic usage examples

BioCantor annotation model examples

API documentation

Indices and tables