biocantor.sequence.alphabet

Module Contents

Classes

Alphabet

Generic enumeration.

Attributes

ALPHABET_TO_NUCLEOTIDE_COMPLEMENT

class biocantor.sequence.alphabet.Alphabet

Bases: enum.Enum

Generic enumeration.

Derive from this class to define new enumerations.

NT_STRICT = ACGT

NT_EXTENDED = ATUCGNWSMKRYBDHV

NT_STRICT_GAPPED = ACGT-

NT_EXTENDED_GAPPED = ATUCGNWSMKRYBDHV-

NT_STRICT_UNKNOWN = ATGCN

AA = GALMFWKQESPVICYHRNDT*

AA_EXTENDED = GALMFWKQESPVICYHRNDTX*

AA_STRICT_GAPPED = GALMFWKQESPVICYHRNDT*.

AA_EXTENDED_GAPPED = GALMFWKQESPVICYHRNDTX*.

AA_STRICT_UNKNOWN = GALMFWKQESPVICYHRNDTX*

GENERIC = ABCDEFGHIJKLMNOPQRSTUVWXYZ-

is_nucleotide_alphabet()

biocantor.sequence.alphabet.ALPHABET_TO_NUCLEOTIDE_COMPLEMENT