`biocantor.sequence.alphabet`

Module Contents

Classes

Generic enumeration.

Attributes

ALPHABET_TO_NUCLEOTIDE_COMPLEMENT

class biocantor.sequence.alphabet.Alphabet

Bases: enum.Enum

Generic enumeration.

Derive from this class to define new enumerations.

NT_STRICT = 'ACGT'

NT_EXTENDED = 'ATUCGNWSMKRYBDHV'

NT_STRICT_GAPPED = 'ACGT-'

NT_EXTENDED_GAPPED = 'ATUCGNWSMKRYBDHV-'

NT_STRICT_UNKNOWN = 'ATGCN'

AA = 'GALMFWKQESPVICYHRNDT*'

AA_EXTENDED = 'GALMFWKQESPVICYHRNDTX*'

AA_STRICT_GAPPED = 'GALMFWKQESPVICYHRNDT*.'

AA_EXTENDED_GAPPED = 'GALMFWKQESPVICYHRNDTX*.'

AA_STRICT_UNKNOWN = 'GALMFWKQESPVICYHRNDTX*'

GENERIC = 'ABCDEFGHIJKLMNOPQRSTUVWXYZ-'

is_nucleotide_alphabet()

biocantor.sequence.alphabet.ALPHABET_TO_NUCLEOTIDE_COMPLEMENT